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26 rodents Cactus

This alignment has been generated in Ensembl release 114 and is composed of 1,298,323 blocks (up to 259,624 bp long).

API access

This alignment set can be accessed using the Compara API via the Bio::EnsEMBL::DBSQL::MethodLinkSpeciesSetAdaptor using the method_link_type "CACTUS_DB" and the species_set_name "collection-rodents".

SpeciesAssemblyGenome length (bp)Genome coverage (bp)Genome coverage (%)Coding exon length (bp)Coding exon coverage (bp)Coding exon coverage (%)
Human (Homo sapiens)GRCh383,099,750,718995,280,28732.1138,571,75429,388,25076.19

Block size distribution

Size range All 1,298,323 alignment blocks
# blocks Total size (incl. gaps)
10 bp - 100 bp
110,102
4.5 Mb
100 bp - 1 kb
255,912
128.0 Mb
1 kb - 10 kb
827,058
3.3 Gb
10 kb - 100 kb
105,242
1.5 Gb
100 kb - 1 Mb
9
1.4 Mb